PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.6HH5W
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 165aa    MW: 18797.6 Da    PI: 9.0582
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.6HH5WgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-152365347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++T+ Ed+ +++a++++G++ W+tIar +  +Rt++ +k++w++ 
      Aradu.6HH5W 23 AFTPKEDDTIIRAHTRFGNK-WATIARLIF-NRTDNAIKNHWNST 65
                     69******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-6428IPR009057Homeodomain-like
SuperFamilySSF466891.66E-18471IPR009057Homeodomain-like
PROSITE profilePS5129420.0231670IPR017930Myb domain
SMARTSM007171.6E-112068IPR001005SANT/Myb domain
CDDcd001675.79E-102366No hitNo description
PfamPF002491.8E-122365IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-172967IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MIKDKSCRLR WCNQLSPQVE YRAFTPKEDD TIIRAHTRFG NKWATIARLI FNRTDNAIKN  60
HWNSTLKRKC ASMDPIDDPH FAQPPKRSVS TGAAILVSTV VVRYSLPTVM AMTEMAGRKG  120
RMRMESQECA VEMSEQMLTT REFSRETMKS MAVCGESLED SGLDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2257040105MYB PROTO-ONCOGENE PROTEIN
1msf_C3e-2257040105C-Myb DNA-Binding Domain
1mse_C3e-2257040105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086742e-92KF208674.1 Arachis hypogaea putative MYB-related protein 20 (MYB20) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015948160.11e-106PREDICTED: myb-related protein Myb4-like
SwissprotQ9FDW12e-40MYB44_ARATH; Transcription factor MYB44
TrEMBLV5T7X26e-57V5T7X2_ARAHY; Putative MYB-related protein 20
STRINGGLYMA11G05550.11e-44(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2082424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-41myb domain protein r1